This list includes selected past projects that were funded by CDRF and are listed alphabetically by researcher. Publications resulting from these projects are provided by the researcher.
Prevalence of Mycobacterium Avium Subspecies Paratuberculosis in Waste Milk Delivered to Five California Ranches
Low rate of detectable in utero transmission of Mycobacterium avium subspecies paratuberculosis in a dairy herd with a low prevalence of Johne’s disease.
Effect of Whey Protein on Body Weight, Body Fat, and Health Indices
Whey Protein but Not Soy Protein Supplementation Alters Body Weight and Composition in Free-Living Overweight and Obese Adults
Influences of Whey Protein on Body Composition, Glucose Metabolism, and Appetite in Middle-Aged Adults at Risk for Metabolic Syndrome
A Model of Intra-Herd Transmission of FMD and its Transmission in California Dairies
A Predictive Model of the Spread and Control of FMD in CA, Using Data from the 2001 FMD Epidemic in Argentina
Simulation Modeling of Foot & Mouth Disease Spread and Control
A dynamic, optimal disease control model for foot-and-mouth disease: I. Model description
A dynamic, optimal disease control model for foot-and-mouth-disease: II. Model results and policy implications
Model could aid emergency response planning for foot-and-mouth disease outbreaks
Epidemic and economic impacts of delayed detection of foot-and-mouth disease: a case study of a simulated outbreak in California
Simulation modeling as an exotic livestock disease disaster planning tool
A simulation model of intraherd transmission of foot and mouth disease with reference to disease spread before and after clinical diagnosis
Emergency vaccination to control foot-and mouth disease: Implications of its inclusion as a U.S. policy option
Potential impact of introduction of foot-and mouth disease from wild pigs into commercial livestock premises in California
Improved Diagnosis and Control of Bovine Protozoal Abortion Caused by Neospora Caninum Parasites
Rapid High-throughput Milk Assay Adaptable to Foot and Mouth Disease and Other Pathogens
Dairy Food Safety Laboratory
Differential levels of mRNA transcripts encoding immunologic mediators in mammary secretions from dairy cows with subclinical environmental Streptococci infections.
Biological markers of neonatal performance: the relationship of insulin-like growth factors-I, zinc and copper to poor neonatal growth.
Toxoplasma in animals, food, and humans: An old parasite of new concern.
Diagnostic Testing and Management Schemes for the Control of Johne’s Agent in Milk
Effect of Diet on Nutrient Excretion and Air Emissions of VOC Methane, and Ammonia by Dry and Lactating Cows
Volatile organic compound emissions from dairy cows and their waste as measured by proton-transfer-reaction mass spectrometry
Establishing Uniqueness of Dairy proteins Against Competitive Soy Protein Products
Sensory properties of whey and soy proteins.
Sensory properties of meal replacement bars and beverages made from whey or soy proteins.
Consumer perception of whey and soy protein in meal replacement products.
Comparison of lexicons for descriptive analysis of whey and soy proteins in New Zealand and the United States
Methods to Increase the Shelf Life of Whole Milk Powder
Effect of package and storage temperature on flavor and flavor stability of whole milk powder.
Lloyd, M.A., Hess, S., and Drake, M.A.
2009. J. Dairy Sci. 92:2409-2422
Flavor variability and flavor stability of US-produced whole milk powder.
Mineral Analysis in California Milk Powder
Certification of California Cattle Herds as Free of Johne’s Disease Using Bayesian Methods
Hierarchical Bayesian model for prevalence inferences and determination of a country’s status for an animal pathogen.
Determining the infection status of a herd..
Sample size calculations for surveys to substantiate freedom of populations from infectious agents.
Milk Glycolipids: Capturing the Value of a Novel Class of Complex Molecular Conjugates
Method for the identification of lipid classes based on referenced Kendrick mass analysis
Rapid profiling of bovine and human milk gangliosides by matrix-assisted laser desorption/ionization Fourier transform ion cyclotron resonance mass spectrometry.
Microbes and health Sackler colloquium: Human milk glycobiome and its impact on the infant gastrointestinal microbiota.
Saturated fats: A perspective from lactation and milk composition
Lactosomes: Structural and compositional classification of unique nanometer-sized protein lipid particles of human milk.
Reconstituted lipoprotein: A versatile class of biologically-inspired nanostructures.
Feeding the world today and tomorrow: The importance of food science and technology
Dietary lipids from an evolutionary perspective: sources, structures and functions.
Use of attenuated total reflectance Fourier transform infrared spectroscopy to study lactosylceramide and GD3 DMPC bilayers
Multiple precursor ion scanning of gangliosides and sulfatides with a reverse-phase microfluidic chip and quadrupole time-of-flight mass spectrometry
The Functional Deconstruction of Milk Oligosaccharides
The complete genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome
Permeate from cheese whey ultrafiltration is a source of milk oligosaccharides.
Glycoprofiling Bifidobacterial consumption of galacto-oligosaccharides by mass spectrometry reveals strain-specific, preferential consumption of glycans
Structural determination and daily variations of porcine milk oligosaccharides
Glycoprotein expression in human milk during lactation
Consumption of human milk oligosaccharides by gut-related microbes
The development of an annotated library of neutral human milk oligosaccharides
Neutral and acidic oligosaccharides in Holstein-Friesian colostrum during the first 3 days of lactation measured by high performance liquid chromatography on a microfluidic chip and time-of-flight mass spectrometry.
Evolutionary glycomics: Characterization of milk oligosaccharides in primates
An infant-associated bacterial commensal utilizes breast milk sialyloligosaccharides
Oligosaccharide binding proteins from Bifidobacterium longum subsp. infantis reveal a preference for host glycans
The influence of milk oligosaccharides on microbiota of infants: Opportunities for formulas
Transcriptome profiling of bovine milk oligosaccharide metabolism genes using RNA-sequencing.
Nano-LC-MS/MS of glycopeptides produced by nonspecific proteolysis enables rapid and extensive site-specific glycosylation determination
Site-specific protein glycosylation analysis with glycan isomer differentiation
Bacteroides in the infant gut consume milk oligosaccharides via mucus-utilization pathways cell host microbe
Polymorphisms in genes in the SREBP1 signalling pathway and SCD are associated with milk fatty acid composition in Holstein cattle
Bifidobacteria isolated from infants and cultured on human milk oligosaccharides affect intestinal epithelial function.
Glycosylation of human milk lactoferrin exhibits dynamic changes during early lactationenhancing its role in pathogenic bacteria-host interactions
Natural variability in bovine milk oligosaccharides from Danish Jersey and Holstein-Friesian breeds
Comparison of the human and bovine milk N-glycome via high-performance microfluidic chip liquid chromatography and tandem mass spectrometry
The Milk Genome: Discovering the Molecular Basis of Milk’s Health Value
Implications of genomics for food and nutrition
Milk: a model for nutrition in the 21st century
Understanding milk’s bioactive components: a goal for the genomics toolbox
Bioguided processing: a paradigm change in food production
Saturated fats: what dietary intake?
Milk beyond essential nutrients: the metabolic food
Genetic dietetics: nutrigenomics and the future of dietetics practice
Nanoliquid chromatography‑mass spectrometry of oligosaccharides employing graphitized carbon chromatography on microchip with a high‑accuracy mass analyzer
Composition, applications, fractionation, technological and nutritional significance of milk fat globule membrane material
Composition, structure, and absorption of milk lipids: a source of energy, fat‑soluble nutrients and bioactive molecules
In vitro fermentation of breast milk oligosaccharides by Bifidobacterium infantis and Lactobacillus gasseri
A strategy for annotating the human milk glycome.
International milk genomics consortium trends food science & technology
Methods for the quantitation of human milk oligosaccharides in bacterial fermentation by mass spectrometry
Comparative review of diets for the metabolic syndrome: implications for nonalcoholic fatty liver disease.
Glycoprofiling of Bifidobacterial consumption of human milk oligosaccharides demonstrates strain specific, preferential consumption of small chain glycans secreted in early human lactation
In vitro fermentability of human milk oligosaccharides by several strains of bifidobacteria
Building the bridges to bioinformatics in nutrition research
Analysis and quantitation of fructooligosaccharides using matrix-assisted laser desorption/Ionization Fourier transform ion cyclotron resonance mass spectrometry
Gene regulatory networks in lactation: identification of global principles using bioinformatics
Daily variations in oligosaccharides of human milk determined by microfluidic chips and mass spectrometry
Human milk oligosaccharides: evolution, structures and bioselectivity as substrates for intestinal bacteria
Size-dependent lipid content in human milk fat globules
Milk fat globule structure and function: nanoscience comes to milk production Trends in Food Science & Technology
The bovine lactation genome: insights into the evolution of mammalian milk
The genome sequence of Taurine cattle: A window to ruminant biology and evolution
Introduction to the proceedings of the symposium “Scientific update on dairy fats and cardiovascular diseases”
A reappraisal of the impact of dairy foods and milk fat on cardiovascular disease risk
Lessons from the bovine genome: implications for human nutrition and research.
Glycoprofiling bifidobacterial consumption of galacto-oligosaccharides by mass spectrometry reveals strain specific, preferential consumption of glycans
Permeate from cheese whey ultrafiltration is a source of milk oligosaccharides
Food in an evolutionary context: insights from mother’s milk
Comprehensive Profiling of Vitamin D Metabolism
Metabolic profiling of major vitamin D metabolites using Diels-Alder derivatization and ultra-performance liquid chromatography-tandem mass spectrometry
Vitamin D intake needed to maintain target serum 25-hydroxyvitamin D concentrations in participants with low sun exposure and dark skin pigmentation is substantially higher than current recommendations
Vitamin D enhances corneal epithelial barrier function
Enhancement of vitamin D metabolites in the eye following vitamin D3 supplementation and UV-B irradiation
Impact on Waste Management in Chronic Exposure of Dairy Cattle to Well Water Nitrate
Dairy Nutrient Management and Groundwater Quality
Evaluation of a simple, inexpensive dialysis sampler for small diameter monitoring wells
Characterizing sources of nitrate leaching from an irrigated dairy farm in Merced County, California
Shallow groundwater quality on dairy farms with irrigated forage crops
Effect of Whey Protein on Weight Loss, Glucose and Lipid Metabolism in Obese Subjects with Insulin Resistance, Polycystic Ovary Syndrome, and Type 2 Diabetes
Relation of nutrients and hormones in polycystic ovary syndrome
Effects of Whey Protein on Weight Loss in Individuals with Metabolic Syndrome
Whey protein supplementation does not alter plasma branched-chained amino acid profiles but results in unique metabolomics patterns in obese women enrolled in an 8-week weight loss trial
Applications for Protein Films and Coatings
Bioactive Compound Incorporation in Protein Films and Coatings
Milk Glycopeptides: A New Class of Bioactive Ingredients from Milk
The Glycoproteomics of Bovine and Human Milk
Genomic Approach to Optimize the Content of Beneficial Oligosaccharides in the Cow Milk Supply
Genomic Understanding of Milk Lipids; A Blueprint for Exploiting Milk’s Natural Variability
Facilitate Producer Management of Environmental Program
Development of Engineered Probiotics for the Reduction of Pathogens
Isolation and characterization of lactic acid bacteria that selectively grow on the unique set of oligosaccharides found in milk
Genetic manipulation of Lactococcus lactis using targeted group II introns: generation of stable insertions without selection
Selected topics in probiotics and prebiotics: Meeting report for the 2004 international scientific association for probiotics and prebiotics
Sanders, M. .E., F. Guarner, D. A. Mills, B. Pot, J. Rafter, B. Rastall, G. Reid, Y. Ringel, I. Rowland, M. Saarela and K. Tuohy.
2005. Current Issues in Intestinal Microbiology. 6: 55-68
Multicopy integration of heterologous genes using the lactococcal group II intron targeted to bacterial insertion sequences
Kinetics of Lactococcus lactis growth and metabolite formation under aerobic and anaerobic conditions at the presence or absence of hemin
Optimization of fed batch production of the model recombinant protein GFP in Lactococcus lactis
Development and optimization of chemically-defined media supporting high cell density growth of lactococci, enterococci, and streptococci
Characterization of the lactococcal group II intron target site in its native host
Sela, D, H. Rawsthorne and D. A. Mills.
2007. Plasmid. 58:127-139
Incorporation of nisI-mediated nisin immunity improves vector-based nisin-controlled gene expression in lactic acid bacteria
Dual inducible expression of recombinant GFP and targeted antisense RNA in Lactococcus lactis
A dynamic, genome-scale flux model of Lactococcus lactis to increase specific recombinant protein expression
Effects of Milk Components on Gastrointestinal Signaling Pathways
Host Effects Derived from Milk-Dependent Production of Soluble Signals from Bifidobacteria
Development of Methods in Diagnostic Epidemiology: Surveillance Models to Enhance Biodefense and Biosecurity Against FMD
Epidemiology of Bovine Protozoal Abortion (BPA) a.k.a. Neospora Caninum: Determinants of Infection and Abortion on Affected Dairies
Impact of Dairy Protein Ingredients Options on Frozen Dairy Desserts
Composition of Milk for Cheese Manufacturing Plants